Genotype Probability Calculator

This genotype probability calculator does the work of a Punnett square: enter two parent genotypes and get every offspring genotype and phenotype probability.

Checks on your data

  • Probabilities were counted from every Punnett box, so they sum to 1.
  • Capital letters are dominant alleles and lowercase are recessive.
  • This assumes independent assortment and complete dominance. Linked genes, incomplete dominance and codominance give different ratios.

Results

Offspring genotypes
AABB: 1/16 = 6.25%; AABb: 2/16 = 12.5%; AAbb: 1/16 = 6.25%; AaBB: 2/16 = 12.5%; AaBb: 4/16 = 25%; Aabb: 2/16 = 12.5%; aaBB: 1/16 = 6.25%; aaBb: 2/16 = 12.5%; aabb: 1/16 = 6.25%
Offspring phenotypes
A_ (dominant), B_ (dominant): 9/16 = 56.25%; A_ (dominant), bb (recessive): 3/16 = 18.75%; aa (recessive), B_ (dominant): 3/16 = 18.75%; aa (recessive), bb (recessive): 1/16 = 6.25%
Phenotype ratio
9 : 3 : 3 : 1
Gametes per parent
4 and 4
Punnett square size
4 × 4 = 16 boxes
Offspring genotype probabilities
00.10.2AABB: 0.0625AABB0.0625AABb: 0.125AABb0.125AAbb: 0.0625AAbb0.0625AaBB: 0.125AaBB0.125AaBb: 0.25AaBb0.25Aabb: 0.125Aabb0.125aaBB: 0.0625aaBB0.0625aaBb: 0.125aaBb0.125aabb: 0.0625aabb0.0625
Genotype probabilities
GenotypeBoxesProbability
AABB10.0625
AABb20.125
AAbb10.0625
AaBB20.125
AaBb40.25
Aabb20.125
aaBB10.0625
aaBb20.125
aabb10.0625
Show step-by-step solution
  1. Parent 1 = AaBb, Parent 2 = AaBb.
  2. Parent 1 makes 4 gametes: AB, Ab, aB, ab. Parent 2 makes 4: AB, Ab, aB, ab.
  3. Cross every gamete of one parent with every gamete of the other to fill 16 Punnett boxes.
  4. Count each genotype and divide by 16. A phenotype is dominant if at least one dominant allele is present.
Aa × Aa1 AA : 2 Aa : 1 aa
AaBb × AaBb9 : 3 : 3 : 1
Boxesgametes₁ × gametes₂

What Is Genotype Probability?

A genotype is the pair of alleles an individual carries for a gene, such as Aa. A Punnett square pairs every gamete from one parent with every gamete from the other and counts the results.

Each parent heterozygous for n genes makes 2 to the power n kinds of gametes. A cross of AaBb with AaBb therefore has a 4 by 4 square of 16 boxes and gives the classic 9 : 3 : 3 : 1 phenotype ratio.

Write each parent with two letters per gene, up to three genes. The calculator assumes complete dominance and independent assortment.

How to Use the Genotype Probability Calculator

  1. Write each parent with two letters per gene, such as Aa or AaBb.
  2. Use the same letter for the same gene in both parents.
  3. Read the genotype and phenotype probabilities, and check the chart.

Genotype Probability Formula

Probability of a genotype

P=boxes with that genotypetotal boxesP=\frac{\text{boxes with that genotype}}{\text{total boxes}}

Gametes from n heterozygous genes

2n2^n

Genotype Probability Variables Explained

SymbolMeaningNotes
A, aDominant and recessive alleles of one geneCapital is dominant
GameteThe single allele per gene a parent passes on
BoxOne gamete pairing in the Punnett square
PProbability of an outcomeBoxes with the outcome ÷ total boxes

Genotype Probability Worked Example

With the example values loaded in the calculator above, the steps are:

  1. Parent 1 = AaBb, Parent 2 = AaBb.
  2. Parent 1 makes 4 gametes: AB, Ab, aB, ab. Parent 2 makes 4: AB, Ab, aB, ab.
  3. Cross every gamete of one parent with every gamete of the other to fill 16 Punnett boxes.
  4. Count each genotype and divide by 16. A phenotype is dominant if at least one dominant allele is present.

Result: Offspring genotypes = AABB: 1/16 = 6.25%; AABb: 2/16 = 12.5%; AAbb: 1/16 = 6.25%; AaBB: 2/16 = 12.5%; AaBb: 4/16 = 25%; Aabb: 2/16 = 12.5%; aaBB: 1/16 = 6.25%; aaBb: 2/16 = 12.5%; aabb: 1/16 = 6.25%; Offspring phenotypes = A_ (dominant), B_ (dominant): 9/16 = 56.25%; A_ (dominant), bb (recessive): 3/16 = 18.75%; aa (recessive), B_ (dominant): 3/16 = 18.75%; aa (recessive), bb (recessive): 1/16 = 6.25%.

Worked example: Aa × Aa

Each parent makes gametes A and a. The four boxes are AA, Aa, Aa and aa.

So P(AA) = 1/4, P(Aa) = 1/2 and P(aa) = 1/4. With complete dominance, the dominant phenotype has probability 3/4 and the recessive 1/4.

Two genes: AaBb × AaBb

Each parent makes four gametes (AB, Ab, aB, ab), so the square has 16 boxes. The phenotypes come out in the classic 9 : 3 : 3 : 1 ratio.

Where Genotype Probability Is Used

Biology homework

Check monohybrid and dihybrid cross answers.

Predicting traits

Find the chance of a recessive phenotype in offspring.

Teaching Punnett squares

See genotype and phenotype counts for any cross of up to three genes.

Common Genotype Probability Mistakes to Avoid

  • Cross two genes by multiplying the probabilities of each gene, if they assort independently.
  • Check your phenotype probabilities add to 1.

Genotype Probability Terms and Definitions

Genotype
The allele pair an individual carries, such as Aa.
Phenotype
The visible trait that results from the genotype.

Genotype Probability FAQs

How do you calculate genotype probability?

Fill a Punnett square with every gametes pairing and divide the count of each genotype by the total number of boxes.

What is the genotype ratio of Aa × Aa?

1 AA : 2 Aa : 1 aa.

What is the phenotype ratio of a dihybrid cross?

AaBb × AaBb gives 9 : 3 : 3 : 1 with complete dominance.

What if the genes are linked?

Linked genes do not assort independently, so the ratios change. This calculator assumes independent assortment.

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Last updated 2026-11-09. See our disclaimer.